About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG15826.1NG5
RPACG15827.1
RPACG15828.1
RPACG15829.1
RPACG15830.1
RPACG15831.1USP DOMAIN-CONTAINING PROTEIN
RPACG15832.1
RPACG15833.1
RPACG15833.2
RPACG15834.1
RPACG15835.1
RPACG15835.2
RPACG15836.1
RPACG15836.2
RPACG15837.1LYMPHOID-SPECIFIC HELICASE
RPACG15838.1LYMPHOID-SPECIFIC HELICASE
RPACG15839.1LYMPHOID-SPECIFIC HELICASE
RPACG15840.1
RPACG15841.1-
RPACG15842.1PEPTIDOGLYCAN RECOGNITION PROTEIN
RPACG15843.1
RPACG15844.1
RPACG15845.1PROTEIN EVA-1
RPACG15846.1UNCHARACTERIZED
RPACG15847.1
RPACG15848.1
RPACG15849.1
RPACG15850.1
RPACG15851.1
RPACG15852.1
RPACG15853.1
RPACG15854.1PROTEIN EVA-1
RPACG15855.1PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
RPACG15856.1PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
RPACG15857.1
RPACG15858.1PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
RPACG15859.1
RPACG15860.1
RPACG15861.1THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
RPACG15862.1
RPACG15863.1COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN-CONTAINING PROTEIN 7
RPACG15864.1
RPACG15865.1
RPACG15866.1REPETIN
RPACG15867.1
RPACG15868.1-
RPACG15868.2
RPACG15869.1-
RPACG15870.1G-PROTEIN COUPLED RECEPTOR
RPACG15871.1
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