About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG13619.1FMRFAMIDE RECEPTOR-RELATED
RPACG13620.1
RPACG13621.1
RPACG13622.1
RPACG13623.1
RPACG13624.1
RPACG13625.1
RPACG13625.2
RPACG13626.1
RPACG13627.1
RPACG13628.1
RPACG13629.1
RPACG13630.1
RPACG13631.1DESTABILASE-RELATED
RPACG13632.1
RPACG13633.1
RPACG13634.1
RPACG13635.1
RPACG13636.1
RPACG13637.1
RPACG13638.1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
RPACG13639.1
RPACG13640.1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
RPACG13640.2
RPACG13640.3
RPACG13641.1DESTABILASE-RELATED
RPACG13642.1
RPACG13643.1ARCHEASE
RPACG13644.1HELICASE
RPACG13645.1
RPACG13646.1MIR-INTERACTING SAPOSIN-LIKE PROTEIN
RPACG13647.1
RPACG13648.1
RPACG13649.1
RPACG13650.1PROTEIN CBG03580
RPACG13651.1
RPACG13652.1
RPACG13653.1UNCHARACTERIZED
RPACG13654.1
RPACG13655.1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
RPACG13656.1MOLYBDOPTERIN COFACTOR SULFURASE MOSC
RPACG13657.1
RPACG13657.2
RPACG13658.1
RPACG13659.1
RPACG13660.1KH DOMAIN CONTAINING RNA BINDING PROTEIN
RPACG13661.1ALTERNATIVE OXIDASE
RPACG13662.1LEISHMANOLYSIN-LIKE PEPTIDASE
RPACG13662.2
RPACG13663.1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
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