About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG13755.1
RPACG13756.1
RPACG13757.1
RPACG13758.1
RPACG13759.1
RPACG13760.1
RPACG13760.2
RPACG13761.1RGD1565685 PROTEIN
RPACG13762.1ZINC FINGER PROTEIN
RPACG13763.1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
RPACG13764.1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
RPACG13765.1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
RPACG13766.1
RPACG13767.1
RPACG13768.1
RPACG13768.2
RPACG13768.3
RPACG13769.1C. ELEGANS HOMEOBOX
RPACG13770.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
RPACG13771.1
RPACG13772.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
RPACG13773.1BONUS, ISOFORM C-RELATED
RPACG13774.1
RPACG13775.1
RPACG13776.1
RPACG13777.1
RPACG13778.1
RPACG13779.1
RPACG13780.1
RPACG13781.1
RPACG13782.1
RPACG13783.1
RPACG13784.1
RPACG13784.2
RPACG13785.1
RPACG13786.1
RPACG13787.1LD39211P
RPACG13788.1MONOCARBOXYLATE TRANSPORTER
RPACG13789.1
RPACG13790.1MONOCARBOXYLATE TRANSPORTER
RPACG13791.1
RPACG13792.1
RPACG13793.1MONOCARBOXYLATE TRANSPORTER
RPACG13794.1
RPACG13795.1
RPACG13796.1LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED
RPACG13797.1
RPACG13798.1
RPACG13799.1SPORE COAT PROTEIN SP85
RPACG13800.1MOLTING PROTEIN MLT-4
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