About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG13490.1
RPACG13490.2
RPACG13491.1
RPACG13492.1
RPACG13493.1-
RPACG13494.1
RPACG13495.1
RPACG13496.1-
RPACG13496.2
RPACG13497.1
RPACG13498.1
RPACG13499.1-
RPACG13500.1
RPACG13501.1
RPACG13502.1
RPACG13503.1
RPACG13504.1
RPACG13504.2
RPACG13505.1-
RPACG13506.1-
RPACG13507.1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
RPACG13508.1
RPACG13508.2
RPACG13509.1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
RPACG13510.1AVIDIN-RELATED
RPACG13510.2
RPACG13511.1HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
RPACG13512.1
RPACG13513.1EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
RPACG13514.1
RPACG13514.2
RPACG13515.1EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
RPACG13516.1
RPACG13517.1-
RPACG13518.1
RPACG13519.1MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
RPACG13520.1GAMMA GLUTAMYL TRANSPEPTIDASE
RPACG13521.1GAMMA GLUTAMYL TRANSPEPTIDASE
RPACG13521.2
RPACG13522.1GAMMA GLUTAMYL TRANSPEPTIDASE
RPACG13522.2
RPACG13522.3
RPACG13522.4
RPACG13523.1AQUAPORIN TRANSPORTER
RPACG13524.1AQUAPORIN TRANSPORTER
RPACG13525.1AMINO ACID TRANSPORTER
RPACG13526.1
RPACG13527.1AQUAPORIN TRANSPORTER
RPACG13528.1AQUAPORIN TRANSPORTER
RPACG13529.1AQUAPORIN TRANSPORTER
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