About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG13351.1
RPACG13352.1
RPACG13353.1G-PROTEIN COUPLED RECEPTOR
RPACG13354.1
RPACG13355.1MATING RESPONSE PROTEIN POI2
RPACG13356.1MATING RESPONSE PROTEIN POI2
RPACG13357.1MATING RESPONSE PROTEIN POI2
RPACG13358.1MATING RESPONSE PROTEIN POI2
RPACG13359.1MATING RESPONSE PROTEIN POI2
RPACG13360.1MATING RESPONSE PROTEIN POI2
RPACG13361.1MATING RESPONSE PROTEIN POI2
RPACG13362.1MATING RESPONSE PROTEIN POI2
RPACG13362.2
RPACG13363.1MATING RESPONSE PROTEIN POI2
RPACG13364.1
RPACG13365.1N-ACETYLGALACTOSAMINYLTRANSFERASE
RPACG13366.1
RPACG13367.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
RPACG13368.1SERINE PROTEASE INHIBITOR
RPACG13369.1-
RPACG13369.2
RPACG13370.1
RPACG13371.1
RPACG13371.2
RPACG13372.1-
RPACG13373.1
RPACG13373.2
RPACG13373.3
RPACG13374.1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
RPACG13375.1TGF-BETA FAMILY
RPACG13376.1
RPACG13377.1
RPACG13378.1
RPACG13379.1
RPACG13380.1
RPACG13381.1
RPACG13382.1SLEI FAMILY PROTEIN
RPACG13382.2
RPACG13383.1
RPACG13384.1
RPACG13385.1
RPACG13386.1
RPACG13387.1
RPACG13388.1
RPACG13389.1
RPACG13390.1INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1-BINDING PROTEIN 1
RPACG13391.1
RPACG13392.1CUBILIN-LIKE PROTEIN
RPACG13393.1
RPACG13394.1ZINC FINGER PROTEIN
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