About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG13131.4
RPACG13132.1STEERIN
RPACG13133.1
RPACG13134.1
RPACG13135.1
RPACG13136.1
RPACG13137.1
RPACG13138.1
RPACG13139.1PROTEIN CBG16428
RPACG13139.2
RPACG13140.1PROTEIN CBG16428
RPACG13141.1
RPACG13141.2
RPACG13142.1-
RPACG13143.1FTP DOMAIN-CONTAINING PROTEIN
RPACG13144.1
RPACG13145.1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
RPACG13146.1
RPACG13146.2
RPACG13147.1
RPACG13148.1
RPACG13149.1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
RPACG13150.1
RPACG13151.1SIN3B-RELATED
RPACG13152.1SIN3B-RELATED
RPACG13152.2
RPACG13152.3
RPACG13152.4
RPACG13153.1ELONGATION FACTOR TU-RELATED
RPACG13154.1ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26
RPACG13154.2
RPACG13155.1CAMK FAMILY PROTEIN KINASE
RPACG13156.1
RPACG13157.1
RPACG13158.1SMALL INTEGRAL MEMBRANE PROTEIN 12
RPACG13159.1PA-PL1 PHOSPHOLIPASE FAMILY
RPACG13160.1
RPACG13161.1NG5
RPACG13162.1
RPACG13163.1
RPACG13164.1XANTHINE DEHYDROGENASE
RPACG13165.1XANTHINE DEHYDROGENASE
RPACG13166.1XANTHINE DEHYDROGENASE
RPACG13167.1XANTHINE DEHYDROGENASE
RPACG13167.2
RPACG13167.3
RPACG13167.4
RPACG13168.1XANTHINE DEHYDROGENASE
RPACG13169.1XANTHINE DEHYDROGENASE
RPACG13170.1
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