About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG12858.1
RPACG12859.1
RPACG12860.1
RPACG12861.1
RPACG12862.1
RPACG12863.1
RPACG12864.1G-PROTEIN COUPLED RECEPTOR 158-RELATED
RPACG12865.1
RPACG12866.1
RPACG12867.1
RPACG12868.1
RPACG12869.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27
RPACG12870.1
RPACG12871.1SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC
RPACG12872.1NUDIX HYDROLASE
RPACG12873.1DYNEIN REGULATORY COMPLEX SUBUNIT 4
RPACG12874.14.1 G PROTEIN
RPACG12875.1
RPACG12876.1
RPACG12877.1
RPACG12878.1
RPACG12879.1
RPACG12880.1
RPACG12881.1
RPACG12882.1D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH
RPACG12883.1
RPACG12884.1UNCHARACTERIZED
RPACG12885.1
RPACG12886.1UNCHARACTERIZED
RPACG12886.2
RPACG12886.3
RPACG12887.1UNCHARACTERIZED
RPACG12888.1PRENYLTRANSFERASES
RPACG12889.1UNCHARACTERIZED
RPACG12890.1LIPOYL SYNTHASE
RPACG12891.1SH3 DOMAIN-CONTAINING
RPACG12892.1RAI16 PROTEIN-RELATED
RPACG12893.1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
RPACG12894.1SRCR DOMAIN-CONTAINING PROTEIN
RPACG12895.1
RPACG12896.1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
RPACG12897.1TOLL-LIKE RECEPTOR
RPACG12897.2
RPACG12898.1
RPACG12899.1TOLL-LIKE RECEPTOR
RPACG12900.1
RPACG12900.2
RPACG12901.1TOLL-LIKE RECEPTOR
RPACG12902.1
RPACG12903.1APOPTOSIS-INDUCING FACTOR 1
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