Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2179092.1 | TOL-PAL SYSTEM PROTEIN TOLA |
| KAK2179093.1 | |
| KAK2179094.1 | |
| KAK2179095.1 | SOLUTE CARRIER FAMILY 5 |
| KAK2179096.1 | METABOTROPIC GLUTAMATE RECEPTOR |
| KAK2179097.1 | METABOTROPIC GLUTAMATE RECEPTOR |
| KAK2179098.1 | |
| KAK2179099.1 | HEMOGEN |
| KAK2179100.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| KAK2179101.1 | PROTEIN MAX MYC-ASSOCIATED FACTOR X |
| KAK2179075.1 | |
| KAK2179076.1 | |
| KAK2179077.1 | TETRASPANIN |
| KAK2179078.1 | NAD DEPENDENT EPIMERASE/DEHYDRATASE |
| KAK2179079.1 | |
| KAK2179080.1 | NUCLEAR PORE COMPLEX PROTEIN NUP205 |
| KAK2179081.1 | PHOSPHOLIPASE D |
| KAK2179082.1 | |
| KAK2179083.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2179084.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2179085.1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
| KAK2179086.1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN |
| KAK2179087.1 | |
| KAK2179059.1 | PROTEIN SSUH2 HOMOLOG |
| KAK2179060.1 | |
| KAK2179061.1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| KAK2179062.1 | UNCHARACTERIZED |
| KAK2179063.1 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
| KAK2179064.1 | CRUMBS FAMILY MEMBER |
| KAK2179065.1 | ALPHA-TECTORIN-RELATED |
| KAK2179066.1 | |
| KAK2179067.1 | NOTCH LIGAND FAMILY MEMBER |
| KAK2179068.1 | ALPHA-TECTORIN-RELATED |
| KAK2179069.1 | |
| KAK2179070.1 | |
| KAK2179071.1 | CRUMBS FAMILY MEMBER |
| KAK2179072.1 | DUDULIN-RELATED |
| KAK2179073.1 | DUDULIN-RELATED |
| KAK2179074.1 | |
| KAK2179039.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2179040.1 | HISTONE ACETYLTRANSFERASE COMPLEX |
| KAK2179041.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| KAK2179042.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| KAK2179043.1 | |
| KAK2179044.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2179045.1 | L1 TRANSPOSABLE ELEMENT-RELATED |
| KAK2179046.1 | HISTONE ACETYLTRANSFERASE COMPLEX |
| KAK2179047.1 | ZINC/IRON TRANSPORTER |
| KAK2179048.1 | |
| KAK2179049.1 | REVERSE TRANSCRIPTASES |
