Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2179356.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2179357.1 | |
| KAK2179358.1 | CONTACTIN 5 |
| KAK2179335.1 | NUCLEAR FACTOR NF-KAPPA-B PROTEIN |
| KAK2179336.1 | |
| KAK2179337.1 | |
| KAK2179338.1 | |
| KAK2179339.1 | |
| KAK2179340.1 | |
| KAK2179341.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2179342.1 | |
| KAK2179343.1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| KAK2179344.1 | |
| KAK2179317.1 | |
| KAK2179318.1 | RIBONUCLEASE P SUBUNIT P21 |
| KAK2179319.1 | CENTRIOLAR COILED-COIL PROTEIN OF 110 KDA |
| KAK2179320.1 | |
| KAK2179321.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2179322.1 | PROTEIN FAM47B |
| KAK2179323.1 | ATP-BINDING CASSETTE SUB-FAMILY C |
| KAK2179324.1 | ATP-BINDING CASSETTE SUB-FAMILY C |
| KAK2179325.1 | UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN |
| KAK2179326.1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
| KAK2179327.1 | DYNEIN HEAVY CHAIN |
| KAK2179328.1 | DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 |
| KAK2179329.1 | UPF0602 PROTEIN C4ORF47 |
| KAK2179330.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| KAK2179331.1 | UNCHARACTERIZED |
| KAK2179332.1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
| KAK2179333.1 | METALLOPROTEASE |
| KAK2179334.1 | BRCA1-ASSOCIATED ATM ACTIVATOR 1 |
| KAK2179304.1 | |
| KAK2179305.1 | PROTEIN DR1 |
| KAK2179306.1 | |
| KAK2179307.1 | LUNG SEVEN TRANSMEMBRANE RECEPTOR |
| KAK2179308.1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| KAK2179309.1 | UNCHARACTERIZED |
| KAK2179310.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| KAK2179311.1 | - |
| KAK2179312.1 | |
| KAK2179313.1 | |
| KAK2179314.1 | PROTEIN CBG11839-RELATED |
| KAK2179315.1 | |
| KAK2179316.1 | |
| KAK2179293.1 | |
| KAK2179294.1 | |
| KAK2179295.1 | |
| KAK2179296.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| KAK2179297.1 | |
| KAK2179298.1 | ARYL HYDROCARBON RECEPTOR |
