Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2179611.1 | GTP-BINDING PROTEIN-RELATED |
| KAK2179612.1 | MOLTING PROTEIN MLT-4 |
| KAK2179613.1 | MYOSIN LIGHT CHAIN 1, 3 |
| KAK2179614.1 | FERREDOXIN-RELATED |
| KAK2179615.1 | 4-NITROPHENYLPHOSPHATASE-RELATED |
| KAK2179616.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2179617.1 | REVERSE TRANSCRIPTASES |
| KAK2179618.1 | 4-NITROPHENYLPHOSPHATASE-RELATED |
| KAK2179619.1 | CALPAIN |
| KAK2179620.1 | |
| KAK2179621.1 | RHO GTPASE-ACTIVATING PROTEIN 100F |
| KAK2179622.1 | RHO GTPASE-ACTIVATING PROTEIN 100F |
| KAK2179575.1 | |
| KAK2179576.1 | PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED |
| KAK2179577.1 | |
| KAK2179578.1 | PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED |
| KAK2179579.1 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| KAK2179580.1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| KAK2179581.1 | BA1-643 |
| KAK2179582.1 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE |
| KAK2179583.1 | TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR |
| KAK2179584.1 | VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN |
| KAK2179549.1 | REVERSE TRANSCRIPTASES |
| KAK2179550.1 | PHOSPHOHEXOMUTASE FAMILY MEMBER |
| KAK2179551.1 | AMINO ACID TRANSPORTER |
| KAK2179552.1 | DYNEIN INTERMEDIATE CHAIN |
| KAK2179553.1 | ANTI-SILENCING PROTEIN 1 |
| KAK2179554.1 | |
| KAK2179555.1 | PROTEIN FAM91A1 |
| KAK2179556.1 | F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED |
| KAK2179557.1 | RETICULOCALBIN |
| KAK2179558.1 | |
| KAK2179559.1 | |
| KAK2179560.1 | RETICULOCALBIN |
| KAK2179561.1 | ANTIGEN BSP, PUTATIVE-RELATED |
| KAK2179562.1 | |
| KAK2179563.1 | |
| KAK2179564.1 | |
| KAK2179565.1 | |
| KAK2179566.1 | |
| KAK2179567.1 | |
| KAK2179568.1 | |
| KAK2179569.1 | |
| KAK2179570.1 | |
| KAK2179571.1 | |
| KAK2179572.1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| KAK2179573.1 | REVERSE TRANSCRIPTASES |
| KAK2179574.1 | UNCHARACTERIZED |
| KAK2179536.1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
