Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2179685.1 | BOLA-LIKE PROTEIN-RELATED |
| KAK2179686.1 | SELENOPROTEIN O |
| KAK2179687.1 | PROTEIN ADENYLYLTRANSFERASE SELO, MITOCHONDRIAL |
| KAK2179688.1 | |
| KAK2179689.1 | NEUROLIGIN |
| KAK2179690.1 | ASPARTATE BETA-HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 |
| KAK2179691.1 | BACTERIOHEMERYTHRIN |
| KAK2179692.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2179693.1 | BACTERIOHEMERYTHRIN |
| KAK2179694.1 | |
| KAK2179695.1 | BACTERIOHEMERYTHRIN |
| KAK2179696.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| KAK2179697.1 | MATRIX METALLOPROTEINASE |
| KAK2179698.1 | |
| KAK2179699.1 | |
| KAK2179700.1 | |
| KAK2179701.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| KAK2179702.1 | REVERSE TRANSCRIPTASES |
| KAK2179703.1 | |
| KAK2179704.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2179705.1 | NUDIX HYDROLASE |
| KAK2179706.1 | MYOTROPHIN |
| KAK2179707.1 | |
| KAK2179656.1 | CALCINEURIN B |
| KAK2179657.1 | |
| KAK2179658.1 | NADPH OXIDASE |
| KAK2179660.1 | NADPH OXIDASE |
| KAK2179659.1 | |
| KAK2179661.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| KAK2179662.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| KAK2179663.1 | |
| KAK2179664.1 | REGULATOR OF G-PROTEIN SIGNALING 22 |
| KAK2179665.1 | REGULATOR OF G-PROTEIN SIGNALING 22 |
| KAK2179666.1 | |
| KAK2179667.1 | |
| KAK2179668.1 | |
| KAK2179669.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| KAK2179670.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| KAK2179671.1 | MYC PROTO-ONCOGENE |
| KAK2179672.1 | UNCHARACTERIZED |
| KAK2179673.1 | FORKHEAD BOX PROTEIN |
| KAK2179635.1 | |
| KAK2179636.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| KAK2179637.1 | |
| KAK2179638.1 | |
| KAK2179639.1 | |
| KAK2179640.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| KAK2179641.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
| KAK2179642.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
| KAK2179643.1 | MYOSIN REGULATORY LIGHT CHAIN 2 |
