Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2178942.1 | |
| KAK2178943.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2178944.1 | |
| KAK2178945.1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| KAK2178946.1 | |
| KAK2178947.1 | TGF-BETA FAMILY |
| KAK2178948.1 | |
| KAK2178949.1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| KAK2178950.1 | |
| KAK2178951.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| KAK2178952.1 | |
| KAK2178953.1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| KAK2178954.1 | |
| KAK2178955.1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| KAK2178956.1 | PNAS-3 RELATED |
| KAK2178922.1 | TUBULIN |
| KAK2178923.1 | PROPERDIN |
| KAK2178924.1 | CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP |
| KAK2178925.1 | |
| KAK2178926.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| KAK2178927.1 | SULFIDE:QUINONE OXIDOREDUCTASE |
| KAK2178928.1 | SULFIDE:QUINONE OXIDOREDUCTASE |
| KAK2178929.1 | SULFIDE:QUINONE OXIDOREDUCTASE |
| KAK2178930.1 | SULFIDE:QUINONE OXIDOREDUCTASE |
| KAK2178931.1 | SULFIDE:QUINONE OXIDOREDUCTASE |
| KAK2178932.1 | |
| KAK2178915.1 | HEAT SHOCK PROTEIN 70KDA |
| KAK2178916.1 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| KAK2178917.1 | CARBONIC ANHYDRASE |
| KAK2178918.1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2178919.1 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| KAK2178920.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| KAK2178921.1 | |
| KAK2178872.1 | |
| KAK2178873.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2178874.1 | |
| KAK2178875.1 | - |
| KAK2178876.1 | PROGRAMMED CELL DEATH PROTEIN 2-LIKE |
| KAK2178877.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| KAK2178878.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| KAK2178879.1 | |
| KAK2178880.1 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL |
| KAK2178881.1 | |
| KAK2178882.1 | |
| KAK2178883.1 | |
| KAK2178884.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| KAK2178885.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| KAK2178886.1 | OVOCHYMASE-RELATED |
| KAK2178887.1 | |
| KAK2178888.1 |
