Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2179159.1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
| KAK2179160.1 | G-PROTEIN COUPLED RECEPTOR |
| KAK2179161.1 | |
| KAK2179135.1 | SERINE/THREONINE-PROTEIN KINASE |
| KAK2179136.1 | |
| KAK2179137.1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| KAK2179138.1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| KAK2179139.1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| KAK2179140.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2179141.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2179142.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2179143.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2179144.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2179124.1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| KAK2179125.1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| KAK2179126.1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| KAK2179127.1 | INHIBITOR OF APOPTOSIS |
| KAK2179128.1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 32 |
| KAK2179129.1 | SEC24-RELATED PROTEIN |
| KAK2179130.1 | |
| KAK2179131.1 | PROTEIN CBG26694 |
| KAK2179132.1 | CYSTATIN FAMILY MEMBER |
| KAK2179133.1 | |
| KAK2179134.1 | HEXOKINASE |
| KAK2179115.1 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
| KAK2179116.1 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
| KAK2179117.1 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
| KAK2179118.1 | GUANYLYL CYCLASE |
| KAK2179119.1 | PROTEIN CBG26694 |
| KAK2179120.1 | |
| KAK2179121.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 14 |
| KAK2179122.1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| KAK2179123.1 | KELCH PROTEIN |
| KAK2179102.1 | LYSOSOMAL ACID LIPASE-RELATED |
| KAK2179103.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| KAK2179104.1 | |
| KAK2179105.1 | ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED |
| KAK2179106.1 | |
| KAK2179107.1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| KAK2179108.1 | SYNAPTOTAGMIN |
| KAK2179109.1 | |
| KAK2179110.1 | |
| KAK2179111.1 | |
| KAK2179112.1 | |
| KAK2179113.1 | |
| KAK2179114.1 | |
| KAK2179088.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2179089.1 | |
| KAK2179090.1 | UNC-93 RELATED |
| KAK2179091.1 |
