About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG10699.1RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG
RPACG10700.1
RPACG10701.1
RPACG10702.180 KDA MCM3-ASSOCIATED PROTEIN
RPACG10703.1CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
RPACG10704.1
RPACG10705.1DENTIN SIALOPHOSPHOPROTEIN
RPACG10706.1
RPACG10707.1
RPACG10708.1
RPACG10709.1
RPACG10710.1
RPACG10711.1
RPACG10712.1
RPACG10713.1BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
RPACG10714.1SHIPPO-1-RELATED
RPACG10715.1EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
RPACG10716.1
RPACG10717.1
RPACG10718.1
RPACG10719.1
RPACG10720.1PROPERDIN
RPACG10721.1NETRIN RECEPTOR UNC5
RPACG10722.1FTP DOMAIN-CONTAINING PROTEIN
RPACG10722.2
RPACG10723.1FTP DOMAIN-CONTAINING PROTEIN
RPACG10724.1FTP DOMAIN-CONTAINING PROTEIN
RPACG10725.1FTP DOMAIN-CONTAINING PROTEIN
RPACG10726.1
RPACG10727.1TETRATRICOPEPTIDE REPEAT PROTEIN 31
RPACG10728.1
RPACG10729.1UNCHARACTERIZED
RPACG10730.1KRAB DOMAIN C2H2 ZINC FINGER
RPACG10731.1
RPACG10732.1
RPACG10733.1COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
RPACG10734.1-
RPACG10735.1
RPACG10736.1
RPACG10737.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG10738.1
RPACG10739.1
RPACG10740.1
RPACG10741.1
RPACG10742.1
RPACG10743.1
RPACG10744.1
RPACG10745.1
RPACG10746.1
RPACG10746.2
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