About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG07009.1PERIOSTIN-RELATED
RPACG07009.2
RPACG07010.1SPORE COAT PROTEIN SP85
RPACG07011.1
RPACG07011.2
RPACG07011.3
RPACG07012.1
RPACG07013.1
RPACG07014.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG07015.1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
RPACG07016.1IG-LIKE DOMAIN-CONTAINING PROTEIN
RPACG07016.2
RPACG07016.3
RPACG07016.4
RPACG07017.1
RPACG07018.1
RPACG07019.1
RPACG07020.1
RPACG07021.1AGAP005329-PA
RPACG07022.1
RPACG07023.1CYSTEINE-RICH, ACIDIC INTEGRAL MEMBRANE PROTEIN-RELATED
RPACG07024.1
RPACG07025.1
RPACG07026.1
RPACG07027.1VOLTAGE-GATED POTASSIUM CHANNEL
RPACG07028.1DYNACTIN 1-RELATED MICROTUBULE-BINDING
RPACG07029.1
RPACG07030.1
RPACG07031.1DYNACTIN 1-RELATED MICROTUBULE-BINDING
RPACG07032.1
RPACG07033.1
RPACG07034.1ANKYRIN REPEAT PROTEIN
RPACG07035.1PROTEASOME ASSEMBLY CHAPERONE 3
RPACG07036.1
RPACG07037.1TYROSINE-PROTEIN KINASE RECEPTOR
RPACG07037.2
RPACG07038.1-
RPACG07039.1CONTACTIN 5
RPACG07040.1PHOSPHOLIPASE-RELATED
RPACG07041.1CDC42 SMALL EFFECTOR PROTEIN HOMOLOG
RPACG07042.1SIGNAL PEPTIDE PEPTIDASE
RPACG07043.1
RPACG07044.1REPETIN
RPACG07045.1REPETIN
RPACG07045.2
RPACG07045.3
RPACG07046.1
RPACG07047.1
RPACG07048.1SMALL NUCLEAR RIBONUCLEOPROTEIN
RPACG07048.2
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