About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG06926.1SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT
RPACG06927.1RFX TRANSCRIPTION FACTOR FAMILY
RPACG06928.1
RPACG06929.1RFX TRANSCRIPTION FACTOR FAMILY
RPACG06930.1
RPACG06931.1
RPACG06931.2
RPACG06932.1LORICRIN
RPACG06933.1
RPACG06933.2
RPACG06934.1
RPACG06934.2
RPACG06934.3
RPACG06935.1
RPACG06936.1
RPACG06937.1RETROTRANSPOSON GAG-LIKE PROTEIN 9
RPACG06937.2
RPACG06938.1RETROTRANSPOSON GAG-LIKE PROTEIN 9
RPACG06939.1RETROTRANSPOSON GAG-LIKE PROTEIN 9
RPACG06940.1MATING RESPONSE PROTEIN POI2
RPACG06941.1DIACYLGLYCEROL KINASE
RPACG06941.2DIACYLGLYCEROL KINASE
RPACG06942.1
RPACG06943.1MUCIN-17
RPACG06944.1
RPACG06945.1
RPACG06946.1
RPACG06947.1
RPACG06948.1
RPACG06949.1
RPACG06950.1
RPACG06950.2
RPACG06951.1DISCS LARGE
RPACG06952.1
RPACG06953.1MULTIPLE PDZ DOMAIN PROTEIN
RPACG06954.1
RPACG06955.1MULTIPLE PDZ DOMAIN PROTEIN
RPACG06956.1BETA-AMYLOID BINDING PROTEIN-RELATED
RPACG06957.1
RPACG06957.2
RPACG06957.3
RPACG06958.1
RPACG06959.1UNCHARACTERIZED
RPACG06960.1
RPACG06961.1UNCHARACTERIZED
RPACG06962.1RAB6A-GEF COMPLEX PARTNER PROTEIN 1
RPACG06963.1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
RPACG06964.1-
RPACG06965.1-
RPACG06966.1PHOSPHORYN, PUTATIVE-RELATED-RELATED
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