About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG06794.1
RPACG06795.1SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
RPACG06796.1
RPACG06797.1
RPACG06798.1ENDONUCLEASE RELATED
RPACG06799.1TRANSCRIPTION INITIATION FACTOR IIB-RELATED
RPACG06800.1
RPACG06801.1PROTEIN CBG05131
RPACG06802.1TRANSCRIPTION INITIATION FACTOR IIB-RELATED
RPACG06803.1
RPACG06804.1
RPACG06805.1
RPACG06806.1
RPACG06807.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG06808.1
RPACG06809.1PNAS-RELATED
RPACG06810.1
RPACG06811.1C-TYPE LECTIN SUPERFAMILY MEMBER
RPACG06812.1FI24210P1
RPACG06813.1HSC70CB, ISOFORM G-RELATED
RPACG06814.1-
RPACG06814.2
RPACG06815.1HSC70CB, ISOFORM G-RELATED
RPACG06815.2
RPACG06816.1ANTIGEN BSP, PUTATIVE-RELATED
RPACG06817.1
RPACG06818.1ANTIGEN BSP, PUTATIVE-RELATED
RPACG06819.1
RPACG06819.2
RPACG06820.1
RPACG06821.1
RPACG06821.2
RPACG06821.3
RPACG06822.1
RPACG06823.1
RPACG06824.1
RPACG06825.1
RPACG06826.1
RPACG06827.1
RPACG06828.1
RPACG06829.1
RPACG06830.1DNA REPAIR PROTEIN SWI5 HOMOLOG
RPACG06831.1COILED-COIL DOMAIN-CONTAINING PROTEIN 151
RPACG06831.2
RPACG06832.1ATF6, ISOFORM C
RPACG06833.1PRESEQUENCE PROTEASE
RPACG06834.1
RPACG06835.1
RPACG06836.1
RPACG06837.1
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