About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG06746.1
RPACG06747.1SPORE COAT PROTEIN SP85
RPACG06748.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG06749.1EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN
RPACG06750.1
RPACG06751.1
RPACG06752.1
RPACG06753.1
RPACG06754.1
RPACG06755.1
RPACG06756.1
RPACG06757.1PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
RPACG06758.1PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
RPACG06759.1
RPACG06760.1
RPACG06761.1
RPACG06762.1DIMETHYLANILINE MONOOXYGENASE
RPACG06763.1
RPACG06764.1-
RPACG06765.1FTP DOMAIN-CONTAINING PROTEIN
RPACG06766.1
RPACG06767.160S RIBOSOMAL PROTEIN L35
RPACG06768.1ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC
RPACG06769.1RAS GTPASE-RELATED
RPACG06770.1
RPACG06771.1
RPACG06772.1
RPACG06773.1
RPACG06774.1SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED
RPACG06775.1CRUMBS FAMILY MEMBER
RPACG06776.1
RPACG06777.1CRUMBS FAMILY MEMBER
RPACG06778.1SUPRABASAL-SPECIFIC PROTEIN SUPRABASIN
RPACG06779.1CRUMBS FAMILY MEMBER
RPACG06780.1
RPACG06780.2
RPACG06781.1
RPACG06782.1
RPACG06783.1
RPACG06784.1
RPACG06785.1CRUMBS FAMILY MEMBER
RPACG06786.1G9A, ISOFORM B
RPACG06787.1
RPACG06788.1
RPACG06789.1
RPACG06790.1
RPACG06790.2
RPACG06791.1-
RPACG06792.1
RPACG06793.1
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