Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Riftia (Genus); Riftia pachyptila (Species)
Riftia pachyptila Jones, 1981
1. Jones M L. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos Rift geothermal vents (Pogonophora)[J]. 1981. (Jones et al., 1981)
Galapagos Rift, Rose Garden geothermal vent 0.8042 (0° 48' 15" N) -86.2247 (86° 13' 29" W), 2,450 meters
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Riftia pachyptila | Annelida | Cold seep, Deep sea, Vent field | 2,514 | hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W) | 6426 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| - | 554Mb | Contig | 2023 | - | QUEEN MARY UNIVERSITY OF LONDON | PRJEB55047 | 99.37 | 2870 | 40.49 | 29.99 | 37,037 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms | nature communications | 37198188 |
| Gene ID | Description |
|---|---|
| RPACG02568.1 | TRANSMEMBRANE PROTEIN 214 |
| RPACG02569.1 | ENOYL-COA HYDRATASE-RELATED |
| RPACG02570.1 | DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER |
| RPACG02570.2 | - |
| RPACG02570.3 | - |
| RPACG02571.1 | TRANSMEMBRANE PROTEIN 234 |
| RPACG02572.1 | MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 |
| RPACG02573.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| RPACG02574.1 | - |
| RPACG02575.1 | - |
| RPACG02575.2 | - |
| RPACG02576.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 21 |
| RPACG02577.1 | ZINC FINGERS AND HOMEOBOXES PROTEIN 1, ISOFORM 2 |
| RPACG02578.1 | D-ALANYL-D-ALANINE CARBOXYPEPTIDASE |
| RPACG02579.1 | WD-REPEAT PROTEIN |
| RPACG02580.1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
| RPACG02581.1 | RGS-GAIP INTERACTING PROTEIN GIPC |
| RPACG02582.1 | 3'-5' EXONUCLEASE ERI1-RELATED |
| RPACG02583.1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN |
| RPACG02584.1 | - |
