About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia luymesi (Species)

Original Name

Lamellibrachia luymesi van der Land & Nørrevang, 1975

Key Reference Paper

1. VAN DER LAND J. The systematic position of Lamellibrachia (Annelida, Vestimentifera)[J]. Zeitschrift fur Zoologische Systematik und Evolutionsforschung, Sonderheft, 1975, 1975: 86-101. (Land et al., 1975)

Etymology

Not stated. Perhaps (from the locality information given) named after a research vessel named "Luymes", in turn named after the hydrographer Johan Lambertus Hendrikus Luymes

Distribution

continental slope off Guyana, S America, North Atlantic Ocean, 8.0167, -57.4° (8 1' N, 57 24' W) "Luymes" Guyana Shelf Exp. sta. 101, depth 500 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA51646795.80 373/24.140.1636.9238,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_024743-T1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_024744-T1CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA
LLU|FUN_024745-T140S RIBOSOMAL PROTEIN S3A
LLU|FUN_024746-T12-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2
LLU|FUN_024747-T1-
LLU|FUN_024748-T1NF-KAPPA B ACTIVATING PROTEIN
LLU|FUN_024749-T1-
LLU|FUN_024750-T1OS10G0105400 PROTEIN
LLU|FUN_024751-T1VACUOLAR ATP SYNTHASE SUBUNIT G
LLU|FUN_024752-T160 KDA RIBONUCLEOPROTEIN SSA/RO
LLU|FUN_024753-T1CALICYLIN BINDING PROTEIN
LLU|FUN_024754-T1-
LLU|FUN_024755-T1-
LLU|FUN_024756-T1SERINE/THREONINE-PROTEIN KINASE
LLU|FUN_024757-T1NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG
LLU|FUN_024758-T1NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG
LLU|FUN_024759-T1-
LLU|FUN_024760-T1SARCOSINE DEHYDROGENASE-RELATED
LLU|FUN_024761-T1ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN
LLU|FUN_024762-T1TETRATRICOPEPTIDE REPEAT PROTEIN 16

Results of comparison between Lamellibrachia luymesi and its nearshore relatives from the paper (Li et al., 2019)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
PTHR44025LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEINPANTHER--expanded--
PTHR12011G-PROTEIN COUPLED RECEPTORPANTHER--expanded--
PTHR11177CHITINASEPANTHER--expanded--
PTHR28576PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEINPANTHER--expanded--
PTHR19325COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGPANTHER--expanded--
PTHR19325COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGPANTHER--expanded--
PTHR11119XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBERPANTHER--expanded--
PTHR10877POLYCYSTIN-RELATEDPANTHER--expanded--
PTHR13802MUCIN 4-RELATEDPANTHER--expanded--
PTHR10131TNF RECEPTOR ASSOCIATED FACTORPANTHER--expanded--
PTHR11908XANTHINE DEHYDROGENASEPANTHER--expanded--
PTHR11709MULTI-COPPER OXIDASEPANTHER--expanded--
PTHR14647GALACTOSE-3-O-SULFOTRANSFERASEPANTHER--expanded--
PTHR23033BETA1,3-GALACTOSYLTRANSFERASEPANTHER--expanded--
PTHR10283SOLUTE CARRIER FAMILY 13 MEMBERPANTHER--expanded--
PTHR24039FIBRILLINPANTHER--expanded--
PTHR14453PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEINPANTHER--expanded--
PTHR14453PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEINPANTHER--expanded--
PTHR24221ABC TRANSPORTERPANTHER--expanded--
PTHR24033FAMILY NOT NAMEDPANTHER--expanded--
PTHR10579CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATORPANTHER--expanded--
PTHR11039NEBULINPANTHER--expanded--
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