Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2193983.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| KAK2193984.1 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
| KAK2193985.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| KAK2193986.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| KAK2193987.1 | |
| KAK2193988.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| KAK2193989.1 | |
| KAK2193990.1 | |
| KAK2193991.1 | |
| KAK2193992.1 | GLYCO_TRANS_2-LIKE DOMAIN-CONTAINING PROTEIN |
| KAK2193993.1 | |
| KAK2193994.1 | |
| KAK2193995.1 | |
| KAK2193877.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| KAK2193878.1 | |
| KAK2193879.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2193880.1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
| KAK2193881.1 | |
| KAK2193882.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| KAK2193883.1 | MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 |
| KAK2193884.1 | |
| KAK2193885.1 | NUCLEAR HORMONE RECEPTOR |
| KAK2193886.1 | |
| KAK2193887.1 | HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED |
| KAK2193888.1 | DNA-REPAIR PROTEIN XRCC1 |
| KAK2193889.1 | |
| KAK2193890.1 | |
| KAK2193891.1 | F-BOX ONLY PROTEIN 38 |
| KAK2193892.1 | JANUS-A/JANUS-B |
| KAK2193893.1 | OVOCHYMASE-RELATED |
| KAK2193894.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2193895.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| KAK2193896.1 | |
| KAK2193897.1 | |
| KAK2193898.1 | |
| KAK2193899.1 | IMMEDIATE EARLY RESPONSE GENE |
| KAK2193900.1 | |
| KAK2193901.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| KAK2193902.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| KAK2193903.1 | |
| KAK2193904.1 | |
| KAK2193905.1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
| KAK2193906.1 | |
| KAK2193907.1 | |
| KAK2193908.1 | |
| KAK2193909.1 | HOMEOBOX PROTEIN BARH-LIKE |
| KAK2193910.1 | SERINE/THREONINE-PROTEIN KINASE KIST |
| KAK2193911.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2193912.1 | PROTEIN MAELSTROM HOMOLOG |
| KAK2193913.1 | PROTEIN MAELSTROM HOMOLOG |
