About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2194090.1CYTOSOLIC REGULATOR PIANISSIMO
KAK2194091.1U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A
KAK2194092.1PROTEIN CBG16200
KAK2194093.1NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNIT
KAK2194094.1FATTY ACID ACYL TRANSFERASE-RELATED
KAK2194095.1CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
KAK2194096.1-
KAK2194097.1AQUAPORIN TRANSPORTER
KAK2194098.1REVERSE TRANSCRIPTASES
KAK2194099.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2194100.1ATP SYNTHASE DELTA/EPSILON CHAIN
KAK2194101.1BETA TRANSDUCIN-RELATED PROTEIN
KAK2194102.1UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN
KAK2194103.1CHLORIDE CHANNEL CLIC-LIKE PROTEIN 1
KAK2194104.1METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED
KAK2194105.1FATTY ACID ACYL TRANSFERASE-RELATED
KAK2194106.1COLON CANCER-ASSOCIATED PROTEIN MIC1
KAK2194107.1FATTY ACID ACYL TRANSFERASE-RELATED
KAK2194108.1PHOSPHOLIPASE B, PLB1
KAK2194109.1HEPARAN SULFATE 2-O-SULFOTRANSFERASE
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