Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2193933.1 | |
| KAK2193934.1 | JOUBERIN |
| KAK2193935.1 | |
| KAK2193936.1 | JOUBERIN |
| KAK2193937.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| KAK2193938.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 4 |
| KAK2193939.1 | DIMETHYLADENOSINE TRANSFERASE |
| KAK2193940.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 |
| KAK2193941.1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| KAK2193942.1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| KAK2193943.1 | COLLAGEN ALPHA |
| KAK2193944.1 | |
| KAK2193945.1 | COLLAGEN ALPHA |
| KAK2193946.1 | |
| KAK2193947.1 | |
| KAK2193948.1 | |
| KAK2193949.1 | |
| KAK2193950.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| KAK2193951.1 | 40S RIBOSOMAL PROTEIN S12 |
| KAK2193952.1 | CENTROSOMAL PROTEIN-RELATED |
| KAK2193953.1 | CENTROSOMAL PROTEIN-RELATED |
| KAK2193954.1 | CENTROSOMAL PROTEIN-RELATED |
| KAK2193955.1 | CENTROSOMAL PROTEIN-RELATED |
| KAK2193956.1 | |
| KAK2193957.1 | |
| KAK2193958.1 | BUCENTAUR RELATED |
| KAK2193959.1 | |
| KAK2193960.1 | REVERSE TRANSCRIPTASES |
| KAK2193961.1 | |
| KAK2193962.1 | TGF-BETA FAMILY |
| KAK2193963.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2193964.1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| KAK2193965.1 | KETOACID-COENZYME A TRANSFERASE |
| KAK2193966.1 | KETOACID-COENZYME A TRANSFERASE |
| KAK2193967.1 | GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL |
| KAK2193968.1 | |
| KAK2193969.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| KAK2193970.1 | 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1 |
| KAK2193971.1 | TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 3 |
| KAK2193972.1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| KAK2193973.1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| KAK2193974.1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| KAK2193975.1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| KAK2193976.1 | LD33804P |
| KAK2193977.1 | FORKHEAD BOX PROTEIN |
| KAK2193978.1 | CDK5 AND ABL1 ENZYME SUBSTRATE 1 |
| KAK2193979.1 | CDK5 AND ABL1 ENZYME SUBSTRATE 1 |
| KAK2193980.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| KAK2193981.1 | |
| KAK2193982.1 |
