About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG03237.1RETINOL DEHYDROGENASE
RPACG03237.2
RPACG03238.1SERINE/THREONINE-PROTEIN KINASE FRAY2
RPACG03239.1
RPACG03240.1
RPACG03240.2
RPACG03241.1
RPACG03242.1AGAP008170-PA
RPACG03243.1L-THREONINE 3-DEHYDROGENASE
RPACG03244.1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
RPACG03245.1
RPACG03246.1POLYCYSTIN FAMILY MEMBER
RPACG03247.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03248.1
RPACG03249.1
RPACG03250.1
RPACG03250.2
RPACG03251.1POLYCYSTIN FAMILY MEMBER
RPACG03251.2
RPACG03252.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03253.1POLYCYSTIN FAMILY MEMBER
RPACG03253.2
RPACG03253.3
RPACG03254.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03255.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03256.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03257.1
RPACG03258.1EXPRESSED PROTEIN
RPACG03259.1
RPACG03260.1
RPACG03260.2
RPACG03261.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG03262.1LIPASE
RPACG03263.1
RPACG03264.1
RPACG03264.2
RPACG03264.3
RPACG03265.1RIBOSOMAL PROTEIN L30
RPACG03266.1PROMININ PROM PROTEIN
RPACG03267.1
RPACG03268.1XK-RELATED PROTEIN
RPACG03269.1
RPACG03270.1
RPACG03270.2
RPACG03271.1
RPACG03272.1TRANSFERASE, PUTATIVE-RELATED
RPACG03273.1TRANSFERASE, PUTATIVE-RELATED
RPACG03274.1
RPACG03274.2
RPACG03274.3
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