About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG03321.1GLYCOSYLTRANSFERASE
RPACG03322.1GRIP-1 ASSOCIATED PROTEIN 1
RPACG03323.1
RPACG03324.1
RPACG03324.2
RPACG03325.1VOLTAGE-GATED POTASSIUM CHANNEL
RPACG03325.2
RPACG03325.3
RPACG03326.1
RPACG03327.1
RPACG03328.1
RPACG03329.1VOLTAGE-GATED POTASSIUM CHANNEL
RPACG03330.1COILED-COIL DOMAIN-CONTAINING PROTEIN 51
RPACG03331.1OTU DOMAIN CONTAINING PROTEIN
RPACG03332.1SERINE/THREONINE-PROTEIN KINASE PIM
RPACG03333.1
RPACG03334.1
RPACG03334.2
RPACG03335.1
RPACG03336.1
RPACG03337.1GLUTAMINE-TRNA LIGASE
RPACG03338.1
RPACG03339.1ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
RPACG03340.1ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1
RPACG03341.1IONOTROPIC GLUTAMATE RECEPTOR
RPACG03342.1UBIQUITIN-ACTIVATING ENZYME E1
RPACG03343.1PRA1 PROTEIN
RPACG03344.1F-BOX ONLY PROTEIN 7
RPACG03345.1ETS
RPACG03345.2
RPACG03346.1
RPACG03347.1
RPACG03348.1IG-LIKE DOMAIN-CONTAINING PROTEIN
RPACG03349.1
RPACG03350.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
RPACG03351.1
RPACG03352.1
RPACG03352.2
RPACG03353.1
RPACG03354.1
RPACG03355.1
RPACG03356.1
RPACG03357.1
RPACG03358.1
RPACG03359.1
RPACG03360.1
RPACG03361.1
RPACG03362.1
RPACG03363.1
RPACG03364.1
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