Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Riftia (Genus); Riftia pachyptila (Species)
Riftia pachyptila Jones, 1981
1. Jones M L. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos Rift geothermal vents (Pogonophora)[J]. 1981. (Jones et al., 1981)
Galapagos Rift, Rose Garden geothermal vent 0.8042 (0° 48' 15" N) -86.2247 (86° 13' 29" W), 2,450 meters
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Riftia pachyptila | Annelida | Cold seep, Deep sea, Vent field | 2,514 | hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W) | 6426 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| - | 554Mb | Contig | 2023 | - | QUEEN MARY UNIVERSITY OF LONDON | PRJEB55047 | 99.37 | 2870 | 40.49 | 29.99 | 37,037 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms | nature communications | 37198188 |
| Gene ID | Description |
|---|---|
| RPACG01189.1 | DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1 |
| RPACG01190.1 | SERINE-THREONINE PROTEIN KINASE |
| RPACG01191.1 | PECANEX |
| RPACG01192.1 | PECANEX |
| RPACG01193.1 | PROTEIN PHOSPHATASE |
| RPACG01194.1 | LYSOPHOSPHOLIPASE-RELATED |
| RPACG01195.1 | - |
| RPACG01196.1 | EXPORTIN 1/5 |
| RPACG01197.1 | - |
| RPACG01198.1 | - |
| RPACG01199.1 | - |
| RPACG01200.1 | - |
| RPACG01201.1 | - |
| RPACG01202.1 | NUCLEAR HORMONE RECEPTOR |
| RPACG01203.1 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN |
| RPACG01204.1 | CHAPERONIN |
| RPACG01205.1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
| RPACG01206.1 | - |
| RPACG01207.1 | - |
| RPACG01208.1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
