About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG02934.1
RPACG02935.1
RPACG02936.1RETICULOCALBIN
RPACG02937.1CRUMBS FAMILY MEMBER
RPACG02938.1CRUMBS FAMILY MEMBER
RPACG02939.1
RPACG02940.1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
RPACG02941.1ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 15
RPACG02942.1CYCLIN
RPACG02943.1CONDENSIN
RPACG02943.2
RPACG02944.1
RPACG02944.2
RPACG02945.1
RPACG02946.1
RPACG02947.1
RPACG02948.1
RPACG02949.1
RPACG02950.1
RPACG02951.1
RPACG02952.1
RPACG02953.1
RPACG02954.1
RPACG02955.1
RPACG02956.1
RPACG02956.2
RPACG02957.1
RPACG02958.1RIKEN CDNA D130052B06 GENE
RPACG02959.1
RPACG02960.1
RPACG02961.1TESTIS-EXPRESSED PROTEIN 15
RPACG02962.1
RPACG02963.1
RPACG02964.1QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE
RPACG02965.1
RPACG02966.1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
RPACG02967.1
RPACG02968.1
RPACG02969.1
RPACG02969.2
RPACG02969.3
RPACG02970.1
RPACG02971.1
RPACG02972.1
RPACG02973.1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
RPACG02974.1WD40 REPEAT PROTEIN
RPACG02975.1RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE
RPACG02976.1LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
RPACG02977.1UNCHARACTERIZED
RPACG02977.2
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