About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG26601.1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
RPACG26602.1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
RPACG26603.1
RPACG26604.1ANNEXIN
RPACG26605.1
RPACG26606.1DUF4605 DOMAIN-CONTAINING PROTEIN
RPACG26607.1
RPACG26608.1
RPACG26609.1
RPACG26609.2
RPACG26610.1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
RPACG26611.1
RPACG26612.1RAS-RELATED GTP BINDING RAG/GTR YEAST
RPACG26613.1
RPACG26614.1FATTY ACID BINDING PROTEIN
RPACG26615.1
RPACG26615.2
RPACG26616.1CASPASE
RPACG26617.1TIM23
RPACG26618.1
RPACG26618.2
RPACG26618.3
RPACG26619.1CENTROMERE PROTEIN E
RPACG26619.2
RPACG26620.1
RPACG26621.1
RPACG26622.1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG26623.1
RPACG26624.1
RPACG26625.1
RPACG26626.1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
RPACG26627.15-HYDROXYTRYPTAMINE RECEPTOR
RPACG26628.1
RPACG26629.1UNCHARACTERIZED
RPACG26630.1GEO12009P1
RPACG26631.1
RPACG26632.1
RPACG26633.1
RPACG26634.1
RPACG26635.1
RPACG26636.1
RPACG26637.1
RPACG26638.1
RPACG26639.1
RPACG26640.1
RPACG26641.1
RPACG26642.1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
RPACG26643.1DNA-DIRECTED RNA POLYMERASE II, III
RPACG26644.1E3 UBIQUITIN-PROTEIN LIGASE CHIP
RPACG26645.1SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN
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