About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG26458.1UNCHARACTERIZED
RPACG26459.1
RPACG26460.1
RPACG26461.1
RPACG26462.1
RPACG26463.1STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN
RPACG26464.1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
RPACG26465.1
RPACG26466.1
RPACG26467.1
RPACG26468.1
RPACG26469.1
RPACG26470.1INNEXIN
RPACG26471.1
RPACG26472.1ACETYLGLUCOSAMINYLTRANSFERASE
RPACG26473.1ENDORIBONUCLEASE LACTB2
RPACG26474.1
RPACG26475.1
RPACG26476.1
RPACG26477.1
RPACG26478.1
RPACG26479.1NOTCH LIGAND FAMILY MEMBER
RPACG26480.1DEOXYRIBONUCLEASE
RPACG26481.1
RPACG26482.1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG26483.1LEUCINE ZIPPER PROTEIN 4-RELATED
RPACG26484.1
RPACG26485.1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG26486.1SOLUTE CARRIER FAMILY 22 MEMBER
RPACG26487.1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
RPACG26488.1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
RPACG26489.1
RPACG26490.1
RPACG26491.1
RPACG26492.1-
RPACG26493.1ROLLING PEBBLES, ISOFORM B
RPACG26494.1
RPACG26495.1
RPACG26496.1
RPACG26497.1
RPACG26498.1
RPACG26499.1
RPACG26500.1
RPACG26501.1
RPACG26502.1
RPACG26503.1
RPACG26504.1
RPACG26505.1
RPACG26506.1
RPACG26507.1
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