About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG26508.1
RPACG26509.1
RPACG26510.1
RPACG26511.1
RPACG26512.1
RPACG26513.1
RPACG26514.1
RPACG26515.1
RPACG26516.1
RPACG26517.1
RPACG26518.1
RPACG26519.1
RPACG26520.1
RPACG26521.1
RPACG26522.1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
RPACG26523.1
RPACG26524.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
RPACG26525.1LORICRIN
RPACG26526.1LORICRIN
RPACG26527.1LORICRIN
RPACG26528.1LORICRIN
RPACG26529.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
RPACG26530.1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
RPACG26531.1PROTEIN CBG18333
RPACG26532.1
RPACG26533.1UBX DOMAIN-CONTAINING PROTEIN 4
RPACG26534.1STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE
RPACG26535.1FIBRILLIN-RELATED
RPACG26536.1FIBRILLIN-RELATED
RPACG26537.1FIBRILLIN-RELATED
RPACG26538.1
RPACG26539.1
RPACG26540.1FIBRILLIN-RELATED
RPACG26540.2
RPACG26540.3
RPACG26540.4
RPACG26541.1
RPACG26542.1HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66
RPACG26543.1
RPACG26544.1HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66
RPACG26544.2
RPACG26545.1
RPACG26546.1
RPACG26547.1
RPACG26547.2
RPACG26548.1GLOBIN-LIKE PROTEIN
RPACG26549.1
RPACG26550.1
RPACG26551.1
RPACG26552.1ACTIN
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