About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s020.g0253.t1GUANYLYL CYCLASE DOMAIN CONTAINING PROTEIN 1 GUCD1
Lsat_s020.g0254.t1-
Lsat_s020.g0255.t1EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER
Lsat_s020.g0256.t1DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2
Lsat_s020.g0257.t1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
Lsat_s020.g0258.t1G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP
Lsat_s020.g0259.t1INO80 COMPLEX SUBUNIT B
Lsat_s020.g0260.t1-
Lsat_s020.g0261.t1RIBONUCLEASE III
Lsat_s020.g0262.t1MITOCHONDRIAL RIBOSOMAL PROTEIN 63
Lsat_s020.g0263.t1ELONGATION FACTOR TU-RELATED
Lsat_s020.g0264.t1NUCLEAR SPECKLE SPLICING REGULATORY PROTEIN 1
Lsat_s020.g0265.t1BONUS, ISOFORM C-RELATED
Lsat_s020.g0266.t1REQUIRED FOR MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG
Lsat_s020.g0267.t1RAN BINDING PROTEIN
Lsat_s020.g0268.t1STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
Lsat_s020.g0269.t1PROTEIN PHOSPHATASE 2C
Lsat_s020.g0270.t1LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN
Lsat_s020.g0271.t1MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
Lsat_s020.g0272.t1TNF RECEPTOR ASSOCIATED FACTOR
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