About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG24622.1
RPACG24623.1UNCHARACTERIZED
RPACG24624.1
RPACG24625.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
RPACG24626.1N-ACETYLGALACTOSAMINYLTRANSFERASE
RPACG24627.1
RPACG24628.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
RPACG24629.1MUCIN 12EA-RELATED
RPACG24630.1
RPACG24631.1
RPACG24631.2
RPACG24632.1
RPACG24633.1MYB-LIKE PROTEIN V
RPACG24634.1POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
RPACG24635.1
RPACG24636.1
RPACG24636.2
RPACG24637.1
RPACG24638.1
RPACG24639.1
RPACG24640.1
RPACG24641.1
RPACG24642.1-
RPACG24643.1NUCLEOPORIN P54
RPACG24644.1UNCHARACTERIZED
RPACG24645.1ZINC FINGER PROTEIN 330
RPACG24646.1OLIGOPHRENIN 1
RPACG24647.1GLYCOSYLTRANSFERASE-RELATED
RPACG24648.1
RPACG24649.1-
RPACG24650.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
RPACG24651.1AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
RPACG24652.1ANKYRIN REPEAT-CONTAINING
RPACG24653.1
RPACG24654.1
RPACG24655.1
RPACG24656.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
RPACG24657.1BEIGE/BEACH-RELATED
RPACG24658.1CELL FATE DETERMINING PROTEIN MAB21-RELATED
RPACG24659.1
RPACG24660.1
RPACG24661.1
RPACG24662.1
RPACG24662.2
RPACG24663.1
RPACG24664.1
RPACG24664.2
RPACG24664.3
RPACG24665.1
RPACG24666.1BEIGE/BEACH-RELATED
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