About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG24401.1DBX
RPACG24402.1
RPACG24403.1ZGC:172139
RPACG24404.1
RPACG24405.1
RPACG24406.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
RPACG24407.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
RPACG24408.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
RPACG24409.1-
RPACG24410.1TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 1
RPACG24411.1CCCH ZINC FINGER/TIS11-RELATED
RPACG24412.1TETRASPANIN
RPACG24413.1TETRASPANIN
RPACG24414.1AGAP011099-PA
RPACG24415.1
RPACG24416.1
RPACG24417.1-
RPACG24418.1UBIQUITIN-CONJUGATING ENZYME E2
RPACG24419.1PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY F MEMBER 2-RELATED
RPACG24420.1RIBONUCLEASE KAPPA
RPACG24421.140S RIBOSOMAL PROTEIN S10
RPACG24422.1ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
RPACG24423.1
RPACG24423.2
RPACG24423.3
RPACG24424.1
RPACG24425.1
RPACG24426.1
RPACG24427.1
RPACG24428.1
RPACG24429.1
RPACG24430.1
RPACG24430.2
RPACG24431.1
RPACG24431.2
RPACG24432.1
RPACG24433.1
RPACG24433.2
RPACG24433.3
RPACG24434.1
RPACG24435.1CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR
RPACG24436.1
RPACG24436.2
RPACG24437.1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
RPACG24438.1
RPACG24439.1
RPACG24439.2
RPACG24440.1LP04239P
RPACG24441.1THROMBOSPONDIN
RPACG24442.1THROMBOSPONDIN
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