About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG24576.1
RPACG24577.1
RPACG24578.1
RPACG24579.1
RPACG24580.1
RPACG24581.1FIBROUS SHEATH CABYR-BINDING PROTEIN
RPACG24582.1FIBROUS SHEATH CABYR-BINDING PROTEIN
RPACG24583.1
RPACG24584.1RHO-TYPE GTPASE ACTIVATING PROTEIN
RPACG24585.1
RPACG24586.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG24587.1
RPACG24588.1
RPACG24589.1-
RPACG24590.1
RPACG24591.1
RPACG24592.1AGAP008170-PA
RPACG24593.1STEROL ISOMERASE
RPACG24594.1
RPACG24595.1TRANSMEMBRANE PROTEIN KIAA1109
RPACG24596.1
RPACG24597.1
RPACG24597.2
RPACG24598.1
RPACG24599.1
RPACG24600.1
RPACG24600.2
RPACG24601.1
RPACG24602.1
RPACG24602.2
RPACG24603.1
RPACG24604.1
RPACG24605.1
RPACG24606.1
RPACG24607.1TRANSMEMBRANE PROTEIN KIAA1109
RPACG24608.1
RPACG24609.1TRANSMEMBRANE PROTEIN KIAA1109
RPACG24610.1
RPACG24611.1
RPACG24612.1TRANSMEMBRANE PROTEIN KIAA1109
RPACG24612.2
RPACG24613.1TYROSINE-PROTEIN KINASE RECEPTOR
RPACG24614.1DEOXYCYTIDYLATE DEAMINASE-RELATED
RPACG24615.1
RPACG24616.1DEOXYCYTIDYLATE DEAMINASE-RELATED
RPACG24617.1
RPACG24618.1PATCHED-RELATED
RPACG24619.1
RPACG24620.1AMINOTRANSFERASE
RPACG24621.1AMINOTRANSFERASE
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