About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG23508.1
RPACG23509.1
RPACG23510.1
RPACG23511.1
RPACG23511.2
RPACG23512.1-
RPACG23513.1
RPACG23514.1
RPACG23515.1
RPACG23516.1
RPACG23517.1
RPACG23518.1TESTIS EXPRESSED GENE 14
RPACG23519.1
RPACG23520.1TESTIS EXPRESSED GENE 14
RPACG23521.1-
RPACG23522.1TESTIS EXPRESSED GENE 14
RPACG23523.1PROTEIN CBG04600
RPACG23524.1SI:CH211-201H21.5-RELATED
RPACG23525.1GUANYLYL CYCLASE
RPACG23525.2
RPACG23526.1
RPACG23527.1
RPACG23528.1
RPACG23529.1
RPACG23530.1UBIQUITIN SPECIFIC PROTEINASE
RPACG23531.1SPORE COAT PROTEIN SP85
RPACG23532.1
RPACG23532.2
RPACG23532.3
RPACG23533.1
RPACG23534.1
RPACG23534.2
RPACG23534.3
RPACG23534.4
RPACG23535.1RASSF
RPACG23536.1NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN
RPACG23537.1TRICHOHYALIN-RELATED
RPACG23538.1UNCHARACTERIZED
RPACG23539.1HISTONE H2A
RPACG23540.1DNA-DAMAGE-INDUCIBLE TRANSCRIPT 4 PROTEIN DDIT4
RPACG23541.1G-PROTEIN COUPLED RECEPTOR
RPACG23542.1
RPACG23543.1
RPACG23543.2
RPACG23544.1
RPACG23545.1G-PROTEIN COUPLED RECEPTOR
RPACG23546.1
RPACG23547.1G-PROTEIN COUPLED RECEPTOR
RPACG23548.1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
RPACG23549.1
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