About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG23640.1UNCHARACTERIZED
RPACG23641.1UNCHARACTERIZED
RPACG23642.1EPH RECEPTOR A5
RPACG23643.1
RPACG23644.1
RPACG23645.1CRUMBS FAMILY MEMBER
RPACG23646.1NOTCH LIGAND FAMILY MEMBER
RPACG23647.1IRON-SULFUR DOMAIN CONTAINING PROTEIN
RPACG23648.1
RPACG23649.1
RPACG23650.1AP COMPLEX SUBUNIT MU
RPACG23651.1
RPACG23652.1
RPACG23653.1SYNAPTOTAGMIN
RPACG23654.1REPETIN
RPACG23655.1REPETIN
RPACG23656.1
RPACG23656.2
RPACG23657.1
RPACG23658.1
RPACG23659.1YALI0E18722P
RPACG23660.1
RPACG23661.1
RPACG23662.1TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN15
RPACG23663.1NITRIC OXIDE SYNTHASE-RELATED
RPACG23664.1
RPACG23665.1
RPACG23666.1
RPACG23667.1
RPACG23668.1
RPACG23669.1INNEXIN
RPACG23669.2
RPACG23670.1INNEXIN
RPACG23671.1
RPACG23671.2
RPACG23672.1ZINC FINGER PROTEIN
RPACG23673.1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
RPACG23674.1TUBULIN MONOGLYCYLASE TTLL3
RPACG23675.1
RPACG23676.1UNCHARACTERIZED
RPACG23677.1
RPACG23678.1
RPACG23679.1
RPACG23680.1-
RPACG23681.1
RPACG23682.1
RPACG23683.1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
RPACG23684.1
RPACG23685.1
RPACG23686.1RAB GDP/GTP EXCHANGE FACTOR
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