About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG23227.1
RPACG23228.1G-PROTEIN COUPLED RECEPTOR TKR-1-RELATED
RPACG23229.1WD40 REPEAT PROTEIN
RPACG23230.1
RPACG23231.1
RPACG23232.1
RPACG23233.1
RPACG23234.1
RPACG23235.1
RPACG23236.1RIKEN CDNA D130052B06 GENE
RPACG23237.1
RPACG23238.1ALPHA-MANNOSIDASE
RPACG23239.1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
RPACG23240.140S RIBOSOMAL PROTEIN SA
RPACG23241.1N-TERMINAL ASPARAGINE AMIDOHYDROLASE
RPACG23242.1
RPACG23243.1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
RPACG23244.1MUCIN 12EA-RELATED
RPACG23245.1UNCHARACTERIZED
RPACG23246.1PERIAXIN-LIKE
RPACG23247.1TETHER CONTAINING UBX DOMAIN FOR GLUT4
RPACG23248.1H4 D10S170 PROTEIN-RELATED
RPACG23249.1WD REPEAT-CONTAINING PROTEIN 53
RPACG23250.1
RPACG23251.1
RPACG23252.1ZINC FINGER PROTEIN
RPACG23253.1
RPACG23254.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG23255.1
RPACG23256.1
RPACG23257.1
RPACG23258.1
RPACG23259.1
RPACG23260.1
RPACG23261.1
RPACG23262.1
RPACG23263.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG23264.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG23265.1
RPACG23265.2
RPACG23266.1
RPACG23267.1
RPACG23268.1
RPACG23269.1
RPACG23270.1
RPACG23271.1
RPACG23272.1
RPACG23273.1
RPACG23274.1
RPACG23275.1
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