About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG23147.1SUGAR KINASE
RPACG23148.1SUGAR KINASE
RPACG23148.2
RPACG23148.3
RPACG23149.1SUGAR KINASE
RPACG23150.1NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT
RPACG23151.15-HYDROXYTRYPTAMINE RECEPTOR
RPACG23152.1
RPACG23153.1
RPACG23154.1SH3 DOMAIN-CONTAINING
RPACG23155.1RIKEN CDNA 4933430I17 GENE
RPACG23156.1
RPACG23157.1ACROSIN-RELATED
RPACG23158.1
RPACG23158.2
RPACG23158.3
RPACG23159.1TRYPSIN-RELATED
RPACG23160.1
RPACG23161.1
RPACG23162.1ACROSIN-RELATED
RPACG23163.1
RPACG23164.1CRUMBS FAMILY MEMBER
RPACG23165.1POTE ANKYRIN DOMAIN
RPACG23166.1CST COMPLEX SUBUNIT TEN1
RPACG23167.1WD REPEAT DOMAIN-CONTAINING FAMILY
RPACG23168.1SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
RPACG23169.1PROTEIN FLATTOP
RPACG23170.1
RPACG23171.1
RPACG23172.1PROTEIN FAM47B
RPACG23173.1
RPACG23174.1
RPACG23174.2
RPACG23174.3
RPACG23175.1TYROSINE-PROTEIN KINASE RECEPTOR
RPACG23176.1TRNA-DIHYDROURIDINE SYNTHASE
RPACG23177.1
RPACG23177.2
RPACG23178.1
RPACG23179.1
RPACG23180.1
RPACG23181.1
RPACG23181.2
RPACG23181.3
RPACG23182.1
RPACG23183.1TYROSINE-PROTEIN KINASE RECEPTOR
RPACG23184.1VANG-LIKE PROTEIN
RPACG23185.1
RPACG23185.2
RPACG23186.1
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