Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2166758.1 | |
| KAK2166748.1 | SMARCE1 REGULATOR OF CHROMATIN |
| KAK2166749.1 | |
| KAK2166750.1 | PYRUVATE DEHYDROGENASE KINASE |
| KAK2166751.1 | ORGANIC ANION TRANSPORTER |
| KAK2166741.1 | - |
| KAK2166742.1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
| KAK2166743.1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
| KAK2166744.1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2166745.1 | G-PROTEIN COUPLED RECEPTOR |
| KAK2166746.1 | IQ DOMAIN-CONTAINING PROTEIN K |
| KAK2166747.1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13 |
| KAK2166704.1 | ZINC METALLOPROTEINASE-RELATED |
| KAK2166705.1 | LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN |
| KAK2166706.1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| KAK2166707.1 | |
| KAK2166708.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| KAK2166709.1 | SUPPRESSOR OF TY 4 |
| KAK2166693.1 | |
| KAK2166694.1 | |
| KAK2166695.1 | |
| KAK2166696.1 | |
| KAK2166697.1 | |
| KAK2166698.1 | |
| KAK2166699.1 | |
| KAK2166700.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2166701.1 | |
| KAK2166702.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2166703.1 | |
| KAK2166689.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2166690.1 | |
| KAK2166691.1 | |
| KAK2166692.1 | |
| KAK2166682.1 | |
| KAK2166683.1 | |
| KAK2166684.1 | |
| KAK2166685.1 | |
| KAK2166686.1 | |
| KAK2166687.1 | MUCIN 4-RELATED |
| KAK2166688.1 | MUCIN 4-RELATED |
| KAK2166675.1 | ANGIOTENSIN-CONVERTING ENZYME |
| KAK2166676.1 | |
| KAK2166677.1 | SERINE/THREONINE-PROTEIN KINASE |
| KAK2166678.1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
| KAK2166679.1 | |
| KAK2166680.1 | |
| KAK2166681.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| KAK2166573.1 | IP22168P |
| KAK2166574.1 | IP22168P |
| KAK2166575.1 | INACTIVE RHOMBOID PROTEIN |
