About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent2,196 the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703
ASM2569855v1574.96MbScaffold2022JALOCR01Third Institute of Oceanography, Ministry of Natural Resources, PRCPRJNA82620691.70%24,096

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environmentBMC Genomics36774470

Gene Information

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Gene IDDescription
KAK2167145.1
KAK2167146.1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
KAK2167147.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2167148.1
KAK2167149.1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
KAK2167150.1IG-LIKE DOMAIN-CONTAINING PROTEIN
KAK2166989.1
KAK2166990.1OS10G0105400 PROTEIN
KAK2166991.1OS10G0105400 PROTEIN
KAK2166992.1OS10G0105400 PROTEIN
KAK2166993.1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
KAK2166994.1
KAK2166995.1
KAK2166996.1
KAK2166997.1OS10G0105400 PROTEIN
KAK2166998.1
KAK2166999.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2167000.1
KAK2167001.1
KAK2166984.1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
KAK2166985.1
KAK2166986.1WD40 REPEAT PF20
KAK2166987.1
KAK2166988.1OLIGOPEPTIDE TRANSPORTER-RELATED
KAK2166975.1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
KAK2166976.1UNCHARACTERIZED
KAK2166977.1KH DOMAIN CONTAINING RNA BINDING PROTEIN
KAK2166978.1
KAK2166979.1F-BOX ONLY PROTEIN 33
KAK2166980.1FRUCTOSE-1,6-BISPHOSPHATASE-RELATED
KAK2166981.1KINESIN-LIKE PROTEIN KLP-3
KAK2166982.1
KAK2166983.1
KAK2166971.1RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
KAK2166972.1ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4
KAK2166973.1FMRFAMIDE RECEPTOR-RELATED
KAK2166974.1RCG26366
KAK2166966.1
KAK2166967.1VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN
KAK2166968.1
KAK2166969.1
KAK2166970.1VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN
KAK2166915.1
KAK2166916.1
KAK2166917.1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
KAK2166918.1
KAK2166919.1CRUMBS FAMILY MEMBER
KAK2166920.1NOTCH LIGAND FAMILY MEMBER
KAK2166910.1HISTONE H4 TRANSCRIPTION FACTOR-RELATED
KAK2166911.1
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