Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2167377.1 | |
| KAK2167378.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| KAK2167379.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| KAK2167380.1 | RETINOBLASTOMA-BINDING PROTEIN 5 |
| KAK2167366.1 | - |
| KAK2167367.1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| KAK2167368.1 | HOMEOBOX PROTEIN |
| KAK2167369.1 | PROTEIN ZERKNUELLT 1-RELATED |
| KAK2167370.1 | |
| KAK2167359.1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED |
| KAK2167360.1 | |
| KAK2167361.1 | CLASP |
| KAK2167362.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
| KAK2167363.1 | LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE |
| KAK2167364.1 | |
| KAK2167365.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| KAK2167316.1 | |
| KAK2167317.1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD |
| KAK2167318.1 | |
| KAK2167319.1 | |
| KAK2167320.1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| KAK2167321.1 | 115 KDA PROTEIN IN TYPE-1 RETROTRANSPOSABLE ELEMENT R1DM-LIKE PROTEIN-RELATED-RELATED |
| KAK2167314.1 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
| KAK2167315.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2167303.1 | REVERSE TRANSCRIPTASES |
| KAK2167304.1 | BUCENTAUR RELATED |
| KAK2167305.1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
| KAK2167306.1 | OVOCHYMASE-RELATED |
| KAK2167307.1 | |
| KAK2167308.1 | PROTEIN CBG26694 |
| KAK2167309.1 | |
| KAK2167310.1 | PROTEIN CBG26694 |
| KAK2167311.1 | |
| KAK2167312.1 | |
| KAK2167313.1 | TRANSMEMBRANE CHANNEL-RELATED |
| KAK2167297.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| KAK2167298.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| KAK2167299.1 | |
| KAK2167300.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2167301.1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 |
| KAK2167302.1 | TROPOMYOSIN |
| KAK2167247.1 | |
| KAK2167248.1 | |
| KAK2167249.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2167250.1 | - |
| KAK2167251.1 | |
| KAK2167252.1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| KAK2167253.1 | UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED |
| KAK2167254.1 | DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 |
| KAK2167255.1 | ZINC FINGER PROTEIN |
