About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG20258.1SET AND MYND DOMAIN-CONTAINING PROTEIN 5
RPACG20259.1TANDEM PH DOMAIN CONTAINING PROTEIN
RPACG20260.1
RPACG20261.1
RPACG20262.1PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED
RPACG20263.1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
RPACG20264.1HELICASE
RPACG20265.1
RPACG20266.1
RPACG20267.1
RPACG20268.1HISTIDINE-RICH GLYCOPROTEIN
RPACG20268.2
RPACG20269.1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
RPACG20270.1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
RPACG20271.1VESICULAR MANNOSE-BINDING LECTIN
RPACG20272.1CONTACTIN 5
RPACG20273.1
RPACG20274.1SERINE/THREONINE-PROTEIN KINASE PLK
RPACG20275.1SERINE/THREONINE-PROTEIN KINASE PLK
RPACG20276.1
RPACG20277.1
RPACG20278.1
RPACG20279.1
RPACG20280.1CYTOKINE RECEPTOR
RPACG20281.1
RPACG20282.1
RPACG20283.1
RPACG20284.1
RPACG20285.1
RPACG20286.1
RPACG20286.2
RPACG20287.1SI:CH211-171H4.7-RELATED
RPACG20287.2
RPACG20288.1REPETIN
RPACG20289.1LORICRIN
RPACG20290.1
RPACG20291.1
RPACG20292.1
RPACG20292.2
RPACG20293.1
RPACG20294.1
RPACG20295.1LYSINE-SPECIFIC DEMETHYLASE
RPACG20296.1CRUMBS FAMILY MEMBER
RPACG20297.1
RPACG20298.1
RPACG20299.1
RPACG20299.2
RPACG20300.1REPETIN
RPACG20301.1
RPACG20302.1
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