About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG20208.1METHYLTRANSFERASE
RPACG20209.1
RPACG20210.1
RPACG20211.1
RPACG20212.1
RPACG20213.1
RPACG20214.1METHYLTRANSFERASE
RPACG20215.1
RPACG20216.1METHYLTRANSFERASE
RPACG20217.1
RPACG20218.1
RPACG20219.1METHYLTRANSFERASE
RPACG20220.1
RPACG20221.1TUMOR ENDOTHELIAL MARKER 7 RELATED
RPACG20222.1
RPACG20223.1TUMOR ENDOTHELIAL MARKER 7 RELATED
RPACG20224.1
RPACG20225.1
RPACG20226.1
RPACG20227.1INNEXIN
RPACG20228.1CENTROSOMAL PROTEIN 2
RPACG20229.1
RPACG20230.1
RPACG20231.1BETA/GAMMA CRYSTALLIN
RPACG20232.1CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR
RPACG20233.1ZINC FINGER PROTEIN
RPACG20234.1METAXIN RELATED
RPACG20235.1
RPACG20236.1SI:CH211-266K2.1
RPACG20237.1
RPACG20238.1UNCHARACTERIZED
RPACG20239.1AP-5 COMPLEX SUBUNIT SIGMA-1
RPACG20240.1-
RPACG20241.1-
RPACG20242.1-
RPACG20243.1-
RPACG20244.1-
RPACG20245.1-
RPACG20246.1-
RPACG20247.1-
RPACG20248.1-
RPACG20249.1-
RPACG20250.1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
RPACG20251.1
RPACG20252.1
RPACG20253.1NUCLEAR RECEPTOR BINDING FACTOR 2
RPACG20254.1ZINC FINGER CCHC DOMAIN-CONTAINING
RPACG20255.1
RPACG20256.1
RPACG20257.1E3 UBIQUITIN-PROTEIN LIGASE TM129
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