About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG20076.1
RPACG20077.1
RPACG20078.1
RPACG20079.1
RPACG20080.1SERINE PROTEASE INHIBITOR, SERPIN
RPACG20081.1PROTEIN CBG11839-RELATED
RPACG20082.1
RPACG20083.1
RPACG20083.2
RPACG20084.1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
RPACG20085.1
RPACG20086.1
RPACG20087.1
RPACG20088.1
RPACG20089.1
RPACG20090.1
RPACG20091.1
RPACG20092.1
RPACG20093.1PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
RPACG20094.1PROTEIN CBG15099
RPACG20095.1
RPACG20096.1
RPACG20097.1PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
RPACG20098.1B-CELL LYMPHOMA/LEUKEMIA 10
RPACG20099.1SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1
RPACG20100.1
RPACG20101.1
RPACG20102.1-
RPACG20103.1ATP-DEPENDENT RNA HELICASE
RPACG20104.1SLEI FAMILY PROTEIN
RPACG20105.1
RPACG20106.1
RPACG20107.1
RPACG20108.1
RPACG20108.2
RPACG20109.1
RPACG20110.1
RPACG20110.2
RPACG20111.1SECRETED MODULAR CALCIUM-BINDING PROTEIN
RPACG20112.1
RPACG20112.2
RPACG20113.1
RPACG20114.1-
RPACG20115.1
RPACG20116.1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
RPACG20116.2
RPACG20116.3
RPACG20116.4
RPACG20117.1
RPACG20118.1PREFOLDIN SUBUNIT 5
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