About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG18190.1
RPACG18191.1NUCLEOSIDE DIPHOSPHATE KINASE 6
RPACG18192.140S RIBOSOMAL PROTEIN S21
RPACG18193.1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
RPACG18194.1SYNTENIN RELATED
RPACG18195.1PHOSPHATASE AND ACTIN REGULATOR PHACTR
RPACG18196.1
RPACG18197.12-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA
RPACG18198.1RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1
RPACG18199.1LYSOPHOSPHOLIPASE-RELATED
RPACG18200.1UNCHARACTERIZED
RPACG18201.1PROTEIN C20ORF43 HOMOLOG
RPACG18202.1UDP-GLUCOSE 4-EPIMERASE
RPACG18203.1
RPACG18204.1
RPACG18205.1
RPACG18206.1CERAMIDE GLUCOSYLTRANSFERASE
RPACG18207.1DIOXYGENASE RV0097-RELATED
RPACG18208.1DIOXYGENASE RV0097-RELATED
RPACG18209.1FAS-ASSOCIATED PROTEIN
RPACG18210.1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
RPACG18211.1
RPACG18211.2
RPACG18211.3
RPACG18212.1
RPACG18213.1
RPACG18214.1
RPACG18215.1
RPACG18216.1
RPACG18217.1
RPACG18218.1
RPACG18219.1
RPACG18220.1
RPACG18221.1
RPACG18222.1
RPACG18223.1
RPACG18224.1
RPACG18225.1
RPACG18226.1
RPACG18227.1
RPACG18228.1
RPACG18229.1
RPACG18230.1
RPACG18231.1
RPACG18232.1
RPACG18233.1
RPACG18234.1
RPACG18235.1
RPACG18236.1
RPACG18237.1
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