About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG18148.1
RPACG18149.1
RPACG18150.1
RPACG18151.1
RPACG18151.2
RPACG18152.1
RPACG18153.1
RPACG18154.1
RPACG18155.1
RPACG18156.1
RPACG18157.1
RPACG18158.150S RIBOSOMAL PROTEIN L15
RPACG18159.1AD039 HT014 THIOREDOXIN FAMILY TRP26
RPACG18160.1PROTEIN DISPATCHED-RELATED
RPACG18161.1SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
RPACG18162.1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
RPACG18163.1UNCHARACTERIZED
RPACG18164.1
RPACG18165.1POLYCYSTIN FAMILY MEMBER
RPACG18166.1
RPACG18166.2
RPACG18166.3
RPACG18167.1
RPACG18167.2
RPACG18167.3
RPACG18167.4
RPACG18167.5
RPACG18168.1
RPACG18169.1
RPACG18169.2
RPACG18170.1FTP DOMAIN-CONTAINING PROTEIN
RPACG18171.1SMALL INTEGRAL MEMBRANE PROTEIN 7
RPACG18172.1PROPERDIN
RPACG18173.1
RPACG18174.1MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE
RPACG18175.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
RPACG18176.1
RPACG18177.1TOL-PAL SYSTEM PROTEIN TOLA
RPACG18178.1
RPACG18179.1
RPACG18180.1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
RPACG18181.1
RPACG18182.1
RPACG18183.1
RPACG18184.1
RPACG18185.1ANKYRIN REPEAT PROTEIN
RPACG18186.1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
RPACG18187.1
RPACG18188.1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
RPACG18189.1
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