About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG17930.1RIBONUCLEASE H2 SUBUNIT A
RPACG17931.1CYCLINS
RPACG17932.1WD-REPEATCONTAINING PROTEIN WDR1
RPACG17933.1
RPACG17934.1PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B
RPACG17935.1
RPACG17936.1SUBGROUP IIII AMINOTRANSFERASE
RPACG17937.1SUBGROUP IIII AMINOTRANSFERASE
RPACG17938.1COILED-COIL DOMAIN-CONTAINING PROTEIN 172
RPACG17939.1
RPACG17940.1
RPACG17941.1ATP-DEPENDENT RNA HELICASE DBP3
RPACG17942.1
RPACG17943.1DOCKING PROTEIN RELATED
RPACG17944.1DOCKING PROTEIN RELATED
RPACG17945.1
RPACG17946.1
RPACG17947.1
RPACG17948.1DYNACTIN 1-RELATED MICROTUBULE-BINDING
RPACG17949.1PHOSPHORYN, PUTATIVE-RELATED-RELATED
RPACG17950.1
RPACG17951.1PATCHED-RELATED
RPACG17952.1
RPACG17953.1
RPACG17954.1FATTY ACID SYNTHASE
RPACG17955.1
RPACG17956.1HELICASE WITH DEATH DOMAIN-RELATED
RPACG17957.1
RPACG17958.1VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN
RPACG17959.1EGF-LIKE DOMAIN-CONTAINING PROTEIN
RPACG17959.2
RPACG17960.1TENASCIN
RPACG17961.1
RPACG17962.1
RPACG17963.1
RPACG17964.1
RPACG17964.2
RPACG17964.3
RPACG17964.4
RPACG17964.5
RPACG17965.1
RPACG17966.1
RPACG17967.1
RPACG17968.1
RPACG17969.1
RPACG17970.1
RPACG17970.2
RPACG17971.1
RPACG17972.1
RPACG17973.1HELICASE
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