About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG17662.1ZGC:174356
RPACG17663.1
RPACG17664.1ZGC:174356
RPACG17665.1
RPACG17665.2
RPACG17666.1
RPACG17667.1
RPACG17668.1
RPACG17668.2
RPACG17669.1FORKHEAD BOX PROTEIN H1
RPACG17670.1CHITINASE
RPACG17671.1NUCLEAR TRANSPORT FACTOR 2
RPACG17671.2
RPACG17671.3
RPACG17672.1ANKYRIN REPEAT-CONTAINING
RPACG17673.1CARBON CATABOLITE REPRESSOR PROTEIN 4
RPACG17673.2
RPACG17674.1CYTOKINE RECEPTOR
RPACG17675.1ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
RPACG17676.1
RPACG17677.1
RPACG17678.1
RPACG17679.1
RPACG17679.2
RPACG17679.3
RPACG17680.1
RPACG17681.1
RPACG17681.2
RPACG17681.3
RPACG17682.1
RPACG17683.1
RPACG17684.1
RPACG17685.1
RPACG17685.2
RPACG17686.1AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A
RPACG17687.1
RPACG17688.1
RPACG17689.1
RPACG17690.1
RPACG17691.1
RPACG17692.1
RPACG17693.1AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A
RPACG17694.1
RPACG17695.1MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
RPACG17696.1
RPACG17697.1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
RPACG17698.1DISCS LARGE
RPACG17699.1UNCHARACTERIZED
RPACG17700.1UNCHARACTERIZED
RPACG17701.1UNCHARACTERIZED
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