About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG17702.1
RPACG17703.1
RPACG17704.1UNCHARACTERIZED
RPACG17705.1UNCHARACTERIZED
RPACG17706.1
RPACG17707.1
RPACG17708.1
RPACG17709.1
RPACG17710.1ANTIGEN BSP, PUTATIVE-RELATED
RPACG17711.1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
RPACG17712.1
RPACG17713.1
RPACG17714.1TSC22 DOMAIN FAMILY PROTEIN 1
RPACG17715.1
RPACG17716.1
RPACG17717.1PHOSPHORYN, PUTATIVE-RELATED-RELATED
RPACG17718.1TSC22 DOMAIN FAMILY PROTEIN 1
RPACG17719.1POTASSIUM/PROTON ANTIPORTER-RELATED
RPACG17720.1
RPACG17721.1
RPACG17722.1NETRIN RECEPTOR UNC5
RPACG17723.1
RPACG17724.1
RPACG17725.1
RPACG17726.1
RPACG17727.1
RPACG17727.2
RPACG17728.1
RPACG17729.1RAN GUANINE NUCLEOTIDE RELEASE FACTOR
RPACG17730.126S PROTEASOME REGULATORY SUBUNIT
RPACG17731.1ZINC FINGER PROTEIN
RPACG17731.2
RPACG17731.3
RPACG17731.4
RPACG17732.1
RPACG17733.1
RPACG17734.1ZINC FINGER PROTEIN
RPACG17735.1
RPACG17736.1
RPACG17737.1
RPACG17738.1
RPACG17738.2
RPACG17738.3
RPACG17738.4
RPACG17739.1
RPACG17740.1ZINC FINGER PROTEIN
RPACG17741.1MICROSOMAL DIPEPTIDASE
RPACG17742.1MICROSOMAL DIPEPTIDASE
RPACG17742.2
RPACG17743.1GLYPICAN
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