About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

<< First 391 392 393 394 395 396 397 398 399 400 Forward> Last>>        604 pages in total

Gene IDDescription
RPACG17627.2
RPACG17627.3
RPACG17627.4
RPACG17628.1
RPACG17629.1CALPAIN-7
RPACG17630.1
RPACG17631.1
RPACG17632.1E3 UBIQUITIN-PROTEIN LIGASE MIB2
RPACG17633.1RGD1565685 PROTEIN
RPACG17634.1PROLINE IMINOPEPTIDASE
RPACG17635.1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
RPACG17636.1ESTERASE OVCA2
RPACG17637.1
RPACG17637.2
RPACG17637.3
RPACG17637.4
RPACG17637.5
RPACG17638.1
RPACG17639.1
RPACG17640.1
RPACG17640.2
RPACG17641.1
RPACG17642.1AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT
RPACG17643.1
RPACG17643.2
RPACG17644.1
RPACG17645.1
RPACG17646.1-
RPACG17646.2
RPACG17647.1N-ACETYLGALACTOSAMINYLTRANSFERASE
RPACG17648.1LSM12 HOMOLOG
RPACG17649.1
RPACG17650.1
RPACG17651.1POU DOMAIN
RPACG17652.1UNCHARACTERIZED
RPACG17652.2
RPACG17652.3
RPACG17652.4
RPACG17653.1SARCOGLYCANS
RPACG17654.1MITOCHONDRIA-EATING PROTEIN-RELATED
RPACG17655.1
RPACG17656.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG17657.1PROTEIN EVA-1
RPACG17658.1AF4/FMR2 FAMILY MEMBER
RPACG17658.2
RPACG17659.1ZGC:174356
RPACG17659.2
RPACG17660.1
RPACG17660.2
RPACG17661.1ZGC:174356
TOP